PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G369200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family LBD
Protein Properties Length: 229aa    MW: 25430.4 Da    PI: 6.1587
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G369200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.41.2e-3871071100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +C aCk+lrrkC+++Cv+apyf++e+ + +f ++hk+FGasnv+kll++lp ++r++a+ ++ yeA ar++dP+yG+v++i++lqqq+ +l+
  Aqcoe2G369200.1.p   7 PCGACKFLRRKCVRGCVFAPYFCHEEgATHFSAIHKVFGASNVSKLLTQLPVSDRSEAAVTISYEALARLQDPIYGCVSHIFALQQQVVNLQ 98 
                        7***********************9989**************************************************************** PP

             DUF260  92 aelallkee 100
                        a+la lk++
  Aqcoe2G369200.1.p  99 AQLAFLKDQ 107
                        ****99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.1586108IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-377105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MTGFGSPCGA CKFLRRKCVR GCVFAPYFCH EEGATHFSAI HKVFGASNVS KLLTQLPVSD  60
RSEAAVTISY EALARLQDPI YGCVSHIFAL QQQVVNLQAQ LAFLKDQAAQ NLSGGCSKTS  120
SSHEDKLYEK FHNFSSQNMQ GFIPSEMSAI QQQFDPNSNN SAETLYHVNE LRDPNPLNNY  180
HHMFMPREND SYNSLEDPSA ASVDMHTNTS KWGFQDAEDL QSVAFPYL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262268.11e-107PREDICTED: LOB domain-containing protein 29
SwissprotQ9M2J72e-63LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA5AIW94e-91A5AIW9_VITVI; Putative uncharacterized protein
STRINGVIT_07s0005g03020.t014e-90(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.17e-52lateral organ boundaries-domain 29